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An Information Portal to Biological Macromolecular Structures |
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Dictionary Resources Home | Dictionary | Category Groups | Categories | Items | Data |
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Category struct_ref_seq 
Category Description
Data items in the STRUCT_REF_SEQ category provide a mechanism
for indicating and annotating a region (or regions) of alignment
between the sequence of an entity or biological unit described
in the data block and the sequence in the referenced database
entry.
Category Examples 
Example 1:
Example 1 - based on the sequence alignment of CHER from M. xantus
(36 to 288) and CHER from S. typhimurium (18 to 276).
_struct_ref_seq.align_id alg1
_struct_ref_seq.ref_id seqdb1
_struct_ref_seq.seq_align_beg 36
_struct_ref_seq.seq_align_end 288
_struct_ref_seq.db_align_beg 18
_struct_ref_seq.db_align_end 276
_struct_ref_seq.details
; The alignment contains 3 gaps larger than 2 residues
;
Key Category Items 
Items in Category struct_ref_seq | Item Name | Mandatory Code |
|---|---|
| _struct_ref_seq.align_id | yes |
| _struct_ref_seq.db_align_beg | yes |
| _struct_ref_seq.db_align_end | yes |
| _struct_ref_seq.details | no |
| _struct_ref_seq.ref_id | yes |
| _struct_ref_seq.seq_align_beg | yes |
| _struct_ref_seq.seq_align_end | yes |