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Category entity_src_gen

Category Description

              Data items in the ENTITY_SRC_GEN category record details of
               the source from which the entity was obtained in cases
               where the source was genetically manipulated.  The
               following are treated separately:  items pertaining to the tissue
               from which the gene was obtained, items pertaining to the host
               organism for gene expression and items pertaining to the actual
               producing organism (plasmid).




Category Examples




Example 1:

    Example 1 - based on PDB entry 5HVP and laboratory records for the
                structure corresponding to PDB entry 5HVP.




    loop_
    _entity_src_gen.entity_id
    _entity_src_gen.gene_src_common_name
    _entity_src_gen.gene_src_genus
    _entity_src_gen.gene_src_species
    _entity_src_gen.gene_src_strain
    _entity_src_gen.host_org_common_name
    _entity_src_gen.host_org_genus
    _entity_src_gen.host_org_species
    _entity_src_gen.plasmid_name
     1  'HIV-1'  '?'  '?'  'NY-5'
        'bacteria'  'Escherichia'  'coli'  'pB322'




Key Category Items

• _entity_src_gen.entity_id



Items in Category entity_src_gen

Item Name	Mandatory Code
_entity_src_gen.entity_id	yes
_entity_src_gen.gene_src_common_name	no
_entity_src_gen.gene_src_details	no
_entity_src_gen.gene_src_genus	no
_entity_src_gen.gene_src_species	no
_entity_src_gen.gene_src_strain	no
_entity_src_gen.gene_src_tissue	no
_entity_src_gen.gene_src_tissue_fraction	no
_entity_src_gen.host_org_common_name	no
_entity_src_gen.host_org_details	no
_entity_src_gen.host_org_genus	no
_entity_src_gen.host_org_species	no
_entity_src_gen.host_org_strain	no
_entity_src_gen.plasmid_details	no
_entity_src_gen.plasmid_name	no

 

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